genelens.netanalyzer.Targets

class documentation

class Targets:

Constructor: Targets(path_to_miRTarBase)

The class extracts and stores the targets of one microRNA and its name

Method	`__init__`	path_to_miRTarBase : str, optional Path to miRTarBase.csv file. Format: [miRNA;target] If path not specified, miRTarbase built-in version loaded.
Method	`get_targets`	miRTarBase contains different forms of miRNA, for example, miR-21- can correspond to miR-21-3p and miR-21-5p. The function concatenates targets of all forms of miRNA and removes duplicates, which arise because the same target can correspond to several lines due to different methods of its confirmation.
Instance Variable	`miR_dict`	Dict{miRNA: [Targets]}

def __init__(self, path_to_miRTarBase=None): ¶

path_to_miRTarBase : str, optional Path to miRTarBase.csv file. Format: [miRNA;target] If path not specified, miRTarbase built-in version loaded.

def get_targets(self, miR_name, verbose=True): ¶

miRTarBase contains different forms of miRNA, for example, miR-21- can correspond to miR-21-3p and miR-21-5p. The function concatenates targets of all forms of miRNA and removes duplicates, which arise because the same target can correspond to several lines due to different methods of its confirmation.

miR_dict: dict = ¶

Dict{miRNA: [Targets]}