genelens.netanalyzer

module documentation

Predicts genes functions via topological analysis of molecular networks

Class GeneralNet Class for storing a gene-gene interaction graph
Class KeyNodesExtractor Key node extractor by step-by-step removing nodes from the graph until the LCC is completely degraded
Class Plots NetAnalyzer visualisation tools
Class Targets The class extracts and stores the targets of one microRNA and its name
Function tissue_selector Function for tissue specific gene extraction
def tissue_selector(ans=None, tissue_id=None): ΒΆ

Function for tissue specific gene extraction ans : int 0 - extraction from Human Protein Atlas 1 - extraction from GTEx tissue_id: int if None: Tissue ID (The choice will be offered interactively)